Are you throwing or handbuilding? How high up the pot are they requiring you to wax?
In a studio with many people of different experience/skill levels, a rule like this is probably in place to protect the kiln shelves.
As other posters have suggested, stilts, trivets or other devices to raise your piece off the kiln shelf and catch and glaze are an option. This may require you to volunteer to help load the kiln, something you should do anyway to make sure your piece is loaded the way you want it. Perhaps even more valuable would be helping to unload the kiln (and clean the kiln shelves) and seeing firsthand what happens when glazes run (and why you have to use wax resist in the first place).
You can also consider colored slips to apply to exposed, unglazed clay, as these should not stick to the kiln shelf. Depending on the recipe, these may need to be applied to leather hard pieces before bisquing.
Another thought is that you think of this as a challenge to trim the bottom of your pot in such a way as to highlight the clay body.
hth, tmo